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ORF Finder (Open Reading Frame Finder)

PubMed Entrez BLAST OMIM Taxonomy Structure

gi|20196974|gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence

Program Database with parameters














Length: 442 aa

   5912 atgatggattcgtcatcatcatcatcattatctctttcaaaaaat
        M  M  D  S  S  S  S  S  S  L  S  L  S  K  N 
   5867 tttcttcgaatctcagttctacttcttattttccctctaacgttc
        F  L  R  I  S  V  L  L  L  I  F  P  L  T  F 
   5822 tgcaaaacatcttctacaaatcaaacactactcttctctctcaaa
        C  K  T  S  S  T  N  Q  T  L  L  F  S  L  K 
   5777 acacagaaacttcctcagtcttcttcagacaagctttcattcaga
        T  Q  K  L  P  Q  S  S  S  D  K  L  S  F  R 
   5732 cacaatgttactctcaccgtcactctcgccgtcggcgatccacct
        H  N  V  T  L  T  V  T  L  A  V  G  D  P  P 
   5687 caaaatatctcgatggttcttgataccggaagcgagctctcatgg
        Q  N  I  S  M  V  L  D  T  G  S  E  L  S  W 
   5642 cttcactgcaagaaatctccaaacttaggatccgtttttaacccg
        L  H  C  K  K  S  P  N  L  G  S  V  F  N  P 
   5597 gtttcatcctctacgtactcccctgtgccttgctcctcaccaatt
        V  S  S  S  T  Y  S  P  V  P  C  S  S  P  I 
   5552 tgcaggacccgtacccgggatttacccatacccgcttcatgcgat
        C  R  T  R  T  R  D  L  P  I  P  A  S  C  D 
   5507 ccgaagacccatctctgccacgtggctatctcctacgctgacgct
        P  K  T  H  L  C  H  V  A  I  S  Y  A  D  A 
   5462 acatcaatcgaaggcaacttggctcatgagacgttcgtaatcggg
        T  S  I  E  G  N  L  A  H  E  T  F  V  I  G 
   5417 tctgtgacccgacccggtactttattcgggtgtatggactcaggt
        S  V  T  R  P  G  T  L  F  G  C  M  D  S  G 
   5372 ttaagctccaattcggaggaagatgctaaatcgaccggtttaatg
        L  S  S  N  S  E  E  D  A  K  S  T  G  L  M 
   5327 ggaatgaaccggggatctttatcttttgttaaccagctgggtttc
        G  M  N  R  G  S  L  S  F  V  N  Q  L  G  F 
   5282 tcaaaattttcgtattgcatatccggttcagattcctccggtttt
        S  K  F  S  Y  C  I  S  G  S  D  S  S  G  F 
   5237 ttgcttctcggtgacgcgtcctactcctggctcggtccaatccaa
        L  L  L  G  D  A  S  Y  S  W  L  G  P  I  Q 
   5192 tatacgcctctggttctacaatcgacgccgttaccttatttcgac
        Y  T  P  L  V  L  Q  S  T  P  L  P  Y  F  D 
   5147 cgggttgcttacacggtccaattagaaggaatccgggtcgggtca
        R  V  A  Y  T  V  Q  L  E  G  I  R  V  G  S 
   5102 aagatactttctttaccgaaatctgtattcgtaccggatcatacc
        K  I  L  S  L  P  K  S  V  F  V  P  D  H  T 
   5057 ggagcaggtcagacgatggtggattcaggtacccaatttacgttc
        G  A  G  Q  T  M  V  D  S  G  T  Q  F  T  F 
   5012 ctaatgggtccggtttacactgccttaaaaaacgagtttattacg
        L  M  G  P  V  Y  T  A  L  K  N  E  F  I  T 
   4967 caaaccaaatcggttctcaggcttgtagacgacccggatttcgtg
        Q  T  K  S  V  L  R  L  V  D  D  P  D  F  V 
   4922 ttccaagggacaatggacctttgttacaaggttgggtcaacgaca
        F  Q  G  T  M  D  L  C  Y  K  V  G  S  T  T 
   4877 cggcccaatttctcgggtttacccatggttagtttaatgttccgt
        R  P  N  F  S  G  L  P  M  V  S  L  M  F  R 
   4832 ggcgcggagatgagtgtgtcgggtcagaaactgttgtaccgggta
        G  A  E  M  S  V  S  G  Q  K  L  L  Y  R  V 
   4787 aacggagccgggtcggaaggaaaagaagaagtatattgcttcacg
        N  G  A  G  S  E  G  K  E  E  V  Y  C  F  T 
   4742 tttgggaactctgatcttttggggatagaagcatttgttataggt
        F  G  N  S  D  L  L  G  I  E  A  F  V  I  G 
   4697 caccatcatcagcaaaacgtgtggatggagtttgatttagctaaa
        H  H  H  Q  Q  N  V  W  M  E  F  D  L  A  K 
   4652 tcaagggttggtttcgctggtaacgtcagatgtgatttagctagt
        S  R  V  G  F  A  G  N  V  R  C  D  L  A  S 
   4607 caacggctcggattaagagattga 4584   
        Q  R  L  G  L  R  D  * 
FramefromtoLength
-14584..59121329
-310039..112441206
+359376..60335960
-390478..91248771
-224047..24814768
+139559..40302744
+120569..21237669
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+276061..76633573
-114028..14552525
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+255646..56137492
-136570..37049480
+157277..57717441
-191584..92012429
+158144..58566423
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+325746..26138393
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-219925..20281357
+186230..86571342
-158089..58424336
-190669..90989321
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+233728..34045318
+337776..38090315
-322303..22608306
-323458..23751294
+127058..27348291
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+150680..50967288
-343852..44139288
-223183..23470288
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-264238..64522285
-356731..57015285
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+344220..44501282
-262483..62758276
-360943..61215273
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-335830..36093264
+226768..27031264
-235195..35449255
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-263191..63439249
-111436..11684249
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-342700..42942243
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-342037..42279243
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-376390..76629240
-235741..35977237
-213988..14224237
-371980..72213234
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-332884..33114231
-370279..70506228
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-327991..28200210
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-164668..64874207
-244423..44626204
-123427..23627201
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-177781..77948168
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-168832..68999168
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-238102..38266165
-125989..26153165
-113707..13871165
-38509..8673165
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-159679..59840162
-248194..48355162
-141928..42089162
-341005..41166162
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-289603..89761159
-384709..84867159
-231883..32041159
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-27901..8059159
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-256978..57133156
-333685..33840156
-116650..16805156
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-24319..4474156
-188878..89030153
-385393..85545153
-175465..75617153
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-272551..72703153
-260140..60292153
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-226396..26548153
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-111790..11942153
-247183..47332150
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-125542..25691150
-225010..25159150
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-213667..13816150
-392404..92550147
+288907..89053147
-184294..84440147
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-161491..61637147
-350920..51066147
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-386701..86844144
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-163666..63809144
-254164..54307144
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