TRANSFAC database
document (Notice to
users) TFMATRIX: binding site
distribution matrix
Parallel Application Tsukuba
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** TFSEARCH ver.1.3 ** (c)1995 Yutaka Akiyama (Kyoto Univ.)
This simple routine searches highly correlated sequence fragments
versus TFMATRIX transcription factor binding site profile database
by E.Wingender, R.Knueppel, P.Dietze, H.Karas (GBF-Braunschweig).
<Warning> Scoring scheme is so straightforward in this version.
score = 100.0 * ('weighted sum' - min) / (max - min)
The score does not properly reflect statistical significance!
Database: TRANSFAC MATRIX TABLE, Rel.3.3 06-01-1998
Query: untitled (490 bases)
Taxonomy: ALL
Threshold: 85.0 point
TFMATRIX entries with High-scoring:
1 AATGTGAGAG TATGGAAGGT TTTTACTGAT TGTTTTAACT GCCTTCCTGT entry score
----------> M00183 c-Myb 92.8
<---------- M00042 Sox-5 90.2
<------- M00148 SRY 90.0
<------------ M00160 SRY 87.9
<--------- M00032 c-Ets- 87.3
------> M00101 CdxA 86.4
----------> M00075 GATA-1 85.7
<------- M00253 cap 85.4
<--------- M00096 Pbx-1 85.3
51 TGCGGCGCTT ATAGATGACA AAATATTGTG TATGCACGGT GGACTTTCGC entry score
<------------ M00229 Skn-1 92.3
<---- M00028 HSF 91.1
101 CGGATCTTGA CCATTTGGAT GAGATTAGAA ACTTGCCGAG ACCAACTATG entry score
-----> M00028 HSF 100.0
-----> M00029 HSF 96.0
<------------ M00229 Skn-1 87.7
-------> M00140 Bcd 87.3
<--- M00101 CdxA 86.4
151 ATTCCGGATA CCGGGCTTCT CTGTGATTTG CTCTGGTCTG ATCCTGGGAA entry score
<---- M00028 HSF 95.3
----------> M00076 GATA-2 95.3
<---- M00029 HSF 93.7
----------> M00075 GATA-1 90.2
<-------- M00253 cap 88.9
<------------------------- M00250 Gfi-1 87.0
---- M00029 HSF 86.9
--- M00101 CdxA 86.4
<---- M00029 HSF 86.3
---- M00028 HSF 85.9
201 AGATGTTAAA GGATGGGGAA TGAATGATAG AGGTGTTTCA TACACCTTTG entry score
<-------- M00253 cap 94.8
-----> M00048 ADR1 93.8
-------> M00083 MZF1 92.2
<------------ M00230 Skn-1 91.8
<-------- M00253 cap 91.6
<------ M00148 SRY 89.1
---------> M00077 GATA-3 89.1
<----- M00142 NIT2 88.8
------> M00101 CdxA 87.9
----------> M00076 GATA-2 87.0
> M00029 HSF 86.9
----------> M00075 GATA-1 86.5
-----> M00029 HSF 86.3
--------> M00253 cap 86.1
> M00028 HSF 85.9
--------------> M00126 GATA-1 85.9
-----------> M00073 deltaE 85.3
------------> M00087 Ik-2 85.1
<-------- M00253 cap 85.1
251 GTCCAGATAA AGTTTCCGAG TTTCTTACGA AACATGATTT AGATCTTGTG entry score
<---- M00028 HSF 100.0
<---- M00029 HSF 96.0
<------------ M00230 Skn-1 91.8
<----- M00142 NIT2 91.2
-----> M00028 HSF 91.1
-------------> M00128 GATA-1 89.1
<------- M00100 CdxA 88.5
---------> M00077 GATA-3 86.9
<---- M00029 HSF 86.9
-----------> M00203 GATA-X 86.8
--------> M00040 CRE-BP 86.7
<-------- M00040 CRE-BP 86.7
<---- M00028 HSF 85.9
-------> M00100 CdxA 85.9
<------ M00101 CdxA 85.7
-------> M00101 CdxA 85.0
301 TGTCGTGCCC ATCAGGTAGA TATTTTTCAA TCATGTCTCT TTGATACTAC entry score
<------ M00142 NIT2 100.0
<---------- M00075 GATA-1 95.5
<----- M00142 NIT2 93.8
---------> M00096 Pbx-1 87.3
--------> M00253 cap 86.6
<---------- M00076 GATA-2 86.6
<--------- M00226 P 86.5
<---- M00253 cap 86.5
<------ M00101 CdxA 85.7
-------> M00101 CdxA 85.7
351 TGCTTTTGTG ATGTTAACAA GGGAGTTGGA TTTTTTATGG CAGGTCGTGG entry score
<--------- M00022 Hb 97.3
--- M00048 ADR1 92.3
------> M00101 CdxA 92.1
------> M00100 CdxA 91.0
- M00075 GATA-1 91.0
--------------> M00090 Abd-B 90.5
<---------- M00216 TATA 90.1
- M00076 GATA-2 89.7
-----> M00048 ADR1 87.7
--- M00253 cap 86.5
--------> M00041 CRE-BP 86.2
<----------------- M00145 Brn-2 86.1
---------------> M00033 p300 85.1
401 AGGATGGGTA TGAGTTCTTT GCTGATAGAC AACTTGTGAC GGTGTTTTCA entry score
<---- M00029 HSF 100.0
--> M00048 ADR1 92.3
--------> M00075 GATA-1 91.0
--- M00253 cap 90.5
<-------- M00253 cap 89.8
---------> M00075 GATA-1 89.8
--------> M00076 GATA-2 89.7
<------ M00148 SRY 89.1
<---- M00028 HSF 88.5
---------> M00076 GATA-2 88.5
<------ M00148 SRY 86.4
<----- M00142 NIT2 85.0
451 GCTCCTAACT ACTGTGGTGA ATTTGATAAT GCTGGTGCGA entry score
-----> M00271 AML-1a 100.0
<----- M00142 NIT2 93.8
----> M00253 cap 90.5
-------------> M00159 C/EBP 87.7
--------------> M00159 C/EBP 86.2
-------> M00101 CdxA 85.7
<-------- M00253 cap 85.2
Total 95 high-scoring sites found.
Max score: 100.0 point, Min score: 85.0 point
TRANSFAC database
document (Notice to
users) TFMATRIX: binding site
distribution matrix Parallel Application Tsukuba
Laboratory Home Page PAPIA system Top
Page