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LOCUS BC045444 2263 bp mRNA linear VRT 07-OCT-2003
DEFINITION Danio rerio cDNA clone MGC:55744 IMAGE:3816387, complete cds.
ACCESSION BC045444
VERSION BC045444.1 GI:28277695
KEYWORDS MGC.
SOURCE Danio rerio (zebrafish)
ORGANISM Danio rerio
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Cypriniformes; Cyprinidae; Danio.
REFERENCE 1 (bases 1 to 2263)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
MEDLINE 22388257
PUBMED 12477932
REFERENCE 2 (bases 1 to 2263)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami
cDNA Library Preparation: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org/
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov/
Series: IRAK Plate: 102 Row: f Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..2263
/organism="Danio rerio"
/mol_type="mRNA"
/strain="AB"
/db_xref="taxon:7955"
/clone="MGC:55744 IMAGE:3816387"
/tissue_type="Whole body, adult, (one male and one female,
including unfertilized eggs)"
/clone_lib="Sugano Kawakami zebrafish DRA"
/lab_host="DH10B"
/note="Vector: pME18S-FL3"
CDS 242..1240
/codon_start=1
/product="Unknown (protein for MGC:55744)"
/protein_id="AAH45444.1"
/db_xref="GI:28277696"
/translation="MAESDKINIDSIIQRLLEVKGSRPGKNVQLTEQEIRGLCLKSRE
IFLSQPILLELEAPLKICGDVHGQYYDLLRLFEYGGYPPESNYLFLGDYVDRGKQSLE
TICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLP
VAAIVDEKIFCCHGGLSPDLQSMEQIRRVMRPTDVPDQGLLCDLLWADPDKDVMGWGE
NDRGVSFTFGSDVVAKFLHKHDMDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEF
DNAGAMMSVDETLMCSFQILKPAEKKVLSYGGAGGFGNSRPVTPPRNTAKGGKAKK"
misc_feature 329..1141
/note="PP2Ac; Region: Protein phosphatase 2A homologues,
catalytic domain. Large family of serine/threonine
phosphatases, that includes PP1, PP2A and PP2B
(calcineurin) family members"
/db_xref="CDD:smart00156"
ORIGIN
1 acccctttac cgtttccttc aaccgtaaac ggtcgtgatg ctagtttacc tcacacaacg
61 aactaccgga gggaccattc gcggcaataa cattgtaaag tacactcagg aataccaaca
121 gtagtatgac tcttttgtaa cgacgttttt ataaagtatt gtcgtgaatt tgtattgggc
181 gggttcccca gcggtctcgt tactggcact gttagccggc taatctccag cgcgcgacaa
241 aatggccgaa tcggacaaaa taaacatcga ttcgatcatc cagcgccttt tggaagtgaa
301 gggctcaaga cctggtaaaa atgttcagtt aactgagcaa gagattcgag gattgtgtct
361 aaaatctcga gaaatctttc ttagtcagcc aatactactg gagctggagg cacccctcaa
421 gatttgtggt gatgttcatg gtcagtacta tgacctgctc aggctttttg agtatggagg
481 atatccacca gagagtaact acctatttct gggagactat gttgacagag gcaagcagtc
541 actggagacc atctgcctgc tgcttgctta caagatcaaa tatccagaga acttctttct
601 tctcagagga aaccatgaat gtgcctcaat caacaggata tatggatttt atgatgaatg
661 taaaagacgt tataacatca agctctggaa aacattcaca gactgtttca actgcttgcc
721 agtagctgct attgtggatg aaaagatttt ttgttgtcat ggaggtcttt ctccagacct
781 gcaatcaatg gaacagattc ggcgtgtgat gaggcctacg gatgtccctg accagggttt
841 gctgtgtgat ctgctctggg ctgaccctga taaagatgtc atgggctggg gagagaatga
901 tcgtggtgtt tccttcacct tcgggtctga tgtcgtggcc aagtttttgc acaaacatga
961 catggatctc atatgcagag cccatcaggt ggtggaggat ggctacgagt tctttgcgaa
1021 gaggcagtta gtcacgcttt tctctgctcc caactactgc ggcgagtttg acaatgcagg
1081 tgccatgatg agtgttgatg agacccttat gtgctcattt cagattctga aaccagcaga
1141 gaagaaggtg ctgtcatatg gcggcgctgg aggatttggg aacagcagac ctgtaactcc
1201 tcctcggaac acagccaagg gtggcaaagc caagaaataa catcaactac tgcagcatgc
1261 ctgaatatcc tgttcatcat tctacctctc cttttctttc tcctcttcta ctccaaacac
1321 caaactagtg cagtgctttt tttttttttt ctctctcatc aagacaagaa tgctgggaat
1381 ctgaatggtc atgtgcgtga atgaaatgct tttgtggagt ttgtgggttt ctatgtgaaa
1441 cagcattgtg tgtgtatttg ttgaaagtga gtttgttgtg agattgtatg caaggttttt
1501 tttttttctt ctttagtaat tacgcacctt ttactgcgtt tattattttt ttttaaagct
1561 gttctggttg actttcttgt aatacgcatc ttcacacata atgttttatt gctttttagg
1621 ccatctattg gacctgcgct ttgccctttt cttcagacca agcctcaggg tccagatttc
1681 tatgaacatt ttcattcccc ttcagctcta aagcaatctg aacagaggtg attgtgctct
1741 tgaattgtgt gcaaatcact gccagtctct tcaatgtgaa actttgtcca agtgcgtgtc
1801 tgtttacagt agttattgac ggcgccctgc acattttgtc atatactttt attttgacac
1861 atcatttgct tattaaaact cacactcggg tagtgtttag cctggcctgt ggaaatgctc
1921 tgtttctttg aatttttggc ttgaacaaat tgtagtaagt tttttttttt tttttttccg
1981 atttatataa aaacgatgca tgctgtgcaa aaacaccaag tgtgaatgtc tacaaagggg
2041 gtgccatcgc tgtttcagtt tgcacaggaa tgcactgttt cttttttttc tgattgtggc
2101 tttgtgccac tttgtaaact gcaaacctca ctttttcctg taaaaaggac tttttttagt
2161 agtcatgaat ttagccaata aagtcagaat ctggtgcaaa aaaaaaaaaa aaaaaaaaaa
2221 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
//
Nov 21 2003 07:32:41
