BLASTN 2.2.6 [Apr-09-2003]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1069885400-27136-110010968666.BLASTQ3

Query= 
         (615 letters)


Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS, or phase 0, 1 or 2 HTGS sequences) 
           1,977,211 sequences; 9,495,739,497 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|28277695|gb|BC045444.1|  Danio rerio cDNA clone MGC:55744...   605   e-170 
gi|13677172|gb|AC010105.12|  Homo sapiens BAC clone RP11-563...    52   0.001 
gi|532580|gb|M27067.1|EMEBIMG  Aspergillus nidulans phosphop...    52   0.001 
gi|24641013|ref|NM_167229.1|  Drosophila melanogaster flap w...    48   0.019 
gi|24641015|ref|NM_079999.2|  Drosophila melanogaster flap w...    48   0.019 
gi|31880067|gb|AC093921.2|  Oryza sativa (japonica cultivar-...    48   0.019 
gi|20152080|gb|AY095072.1|  Drosophila melanogaster RE17877 ...    48   0.019 
gi|17432890|gb|AC025362.12|  Homo sapiens chromosome 17, clo...    48   0.019 
gi|34530208|dbj|AK124426.1|  Homo sapiens cDNA FLJ42435 fis,...    48   0.019 
gi|17861429|gb|AY069047.1|  Drosophila melanogaster GH05039 ...    48   0.019 
gi|3810668|gb|AC005803.1|AC005803  Homo sapiens chromosome 1...    48   0.019 
gi|8367|emb|X56439.1|DMPP1B  D.melanogaster PP1-beta 9C gene...    48   0.019 
gi|33412079|emb|BX004815.6|  Zebrafish DNA sequence from clo...    46   0.075 
gi|31419587|gb|BC053296.1|  Danio rerio cDNA clone MGC:64169...    44   0.30  
gi|33112733|gb|AC118632.7|  Mus musculus chromosome 18, clon...    44   0.30  
gi|18405182|ref|NM_129543.1|  Arabidopsis thaliana phosphopr...    44   0.30  
gi|6635875|emb|AL135960.1|  Human DNA sequence from clone RP...    44   0.30  
gi|21306691|gb|AC103596.2|  Homo sapiens chromosome 1 clone ...    44   0.30  
gi|20196974|gb|AC003000.3|  Arabidopsis thaliana chromosome ...    44   0.30  
gi|6911928|emb|AJ131016.1|HSA131016  Homo sapiens SCL gene l...    44   0.30  
gi|2642452|gb|AC002504.1|  Homo sapiens X PAC RP1-258N20 (Ro...    44   0.30  
gi|26105533|dbj|AK089766.1|  Mus musculus activated spleen c...    44   0.30  
gi|26251788|gb|BC040537.1|  Homo sapiens, clone IMAGE:526590...    44   0.30  
gi|11094943|gb|AC084493.1|CBRG08J21  Caenorhabditis briggsae...    44   0.30  
gi|166800|gb|M93411.1|ATHPPHAC  Arabidopsis thaliana phospho...    44   0.30  
gi|34495165|gb|AC127350.3|  Mus musculus BAC clone RP23-64P1...    42   1.2   
gi|34482131|gb|AC127269.3|  Mus musculus BAC clone RP23-432B...    42   1.2   
gi|37620300|gb|AC134791.8|  Mus musculus chromosome 14, clon...    42   1.2   
gi|33235760|gb|AC117668.9|  Mus musculus, clone RP23-367H12,...    42   1.2   
gi|32140818|gb|AY152836.1|  Felis catus clone BAC 160a17 maj...    42   1.2   
gi|32140815|gb|AY152835.1|  Felis catus clone PAC g7 major h...    42   1.2   
gi|23396222|gb|AC130455.2|  Homo sapiens chromosome 16 clone...    42   1.2   
gi|12275122|emb|AL109911.47|HS1107C24  Human DNA sequence fr...    42   1.2   
gi|15375156|gb|AC026401.7|  Homo sapiens chromosome 16 clone...    42   1.2   
gi|3417288|gb|U95740.1|HUU95740  Human Chromosome 16 BAC clo...    42   1.2   
gi|30268424|emb|BX284114.6|  Mouse DNA sequence from clone R...    42   1.2   
gi|2895759|gb|AF045246.1|AF045246  Crithidia fasciculata uni...    42   1.2   
gi|25137140|emb|AL591544.30|  Mouse DNA sequence from clone ...    42   1.2   
gi|16944727|emb|AL162575.15|  Human DNA sequence from clone ...    42   1.2   
gi|12666264|emb|AL358174.12|  Human DNA sequence from clone ...    42   1.2   
gi|23395887|emb|AL929127.2|  Mouse DNA sequence from clone R...    42   1.2   
gi|37060012|gb|AC131714.4|  Mus musculus BAC clone RP23-179L...    40   4.6   
gi|24643229|ref|NM_167646.1|  Drosophila melanogaster CG3282...    40   4.6   
gi|27802067|gb|AC127365.4|  Mus musculus BAC clone RP23-8K10...    40   4.6   
gi|22137534|gb|BC025311.1|  Homo sapiens hedgehog interactin...    40   4.6   
gi|34914463|ref|NM_193690.1|  Oryza sativa (japonica cultiva...    40   4.6   
gi|31342484|ref|NM_174258.2|  Bos taurus caldesmon, smooth m...    40   4.6   
gi|20143972|ref|NM_022475.1|  Homo sapiens hedgehog interact...    40   4.6   
gi|37182612|gb|AY358747.1|  Homo sapiens clone DNA139592 HIP...    40   4.6   
gi|34365936|gb|AC116713.8|  Mus musculus chromosome 9, clone...    40   4.6   
gi|33589943|gb|AC107806.10|  Mus musculus chromosome 3, clon...    40   4.6   
gi|33874469|gb|BC009298.2|  Homo sapiens hedgehog interactin...    40   4.6   
gi|24251216|gb|AY154474.1|  Bos taurus l-caldesmon mRNA, com...    40   4.6   
gi|24211071|gb|AC079456.28|  Homo sapiens 12 BAC RP11-206B11...    40   4.6   
gi|22476068|gb|AC022210.8|  Homo sapiens BAC clone RP11-617F...    40   4.6   
gi|29465715|gb|AY083681.1|  Avena sativa clone OP14 receptor...    40   4.6   
gi|29465710|gb|AY083679.1|  Avena sativa clone OP10rc recept...    40   4.6   
gi|21903634|gb|AC015688.11|  Homo sapiens chromosome 17, clo...    40   4.6   
gi|33666926|emb|AL928780.4|CNS08CCA  Oryza sativa chromosome...    40   4.6   
gi|21326253|gb|AC087878.7|  Homo sapiens chromosome 15, clon...    40   4.6   
gi|21263229|gb|AC074140.5|  Homo sapiens chromosome 19 clone...    40   4.6   
gi|22832558|gb|AE003512.3|  Drosophila melanogaster chromoso...    40   4.6   
gi|14290369|gb|AC078962.30|  Homo sapiens 12 BAC RP11-338E21...    40   4.6   
gi|20087106|gb|AC068062.7|  Homo sapiens chromosome 10 clone...    40   4.6   
gi|37573161|dbj|AP005123.4|  Oryza sativa (japonica cultivar...    40   4.6   
gi|16304955|emb|AL583841.16|  Human DNA sequence from clone ...    40   4.6   
gi|15022185|emb|AL355140.25|  Human DNA sequence from clone ...    40   4.6   
gi|18464385|gb|AC104091.4|  Homo sapiens BAC clone RP11-1173...    40   4.6   
gi|18250131|gb|AC098588.3|  Homo sapiens BAC clone RP11-291L...    40   4.6   
gi|1929405|emb|Z93769.1|NTNPP2  N.tabacum npp2 mRNA for prot...    40   4.6   
gi|17488742|gb|AC068700.5|  Homo sapiens chromosome 8, clone...    40   4.6   
gi|10178452|emb|AL160053.15|  Human DNA sequence from clone ...    40   4.6   
gi|16648301|gb|AY060377.1|  Drosophila melanogaster LD26231 ...    40   4.6   
gi|16572984|gb|AC092048.2|  Homo sapiens chromosome 3 clone ...    40   4.6   
gi|15990496|gb|BC015636.1|BC015636  Homo sapiens, Similar to...    40   4.6   
gi|32166066|emb|AL824714.17|  Mouse DNA sequence from clone ...    40   4.6   
gi|3659491|gb|AC005388.1|T22H22  Sequence of BAC T22H22 from...    40   4.6   
gi|15408645|dbj|AP003203.3|  Oryza sativa (japonica cultivar...    40   4.6   
gi|13959779|gb|AY009317.1|  Homo sapiens hedgehog-interactin...    40   4.6   
gi|29691876|emb|AL929107.14|  Mouse DNA sequence from clone ...    40   4.6   
gi|14249062|gb|AC011071.12|AC011071  Drosophila melanogaster...    40   4.6   
gi|3449129|emb|AL023773.1|HS406C18  Human DNA sequence from ...    40   4.6   
gi|4581353|emb|AL031407.3|HS436K10  Human DNA sequence from ...    40   4.6   
gi|13324739|gb|AC012376.11|AC012376  Drosophila melanogaster...    40   4.6   
gi|11528009|gb|AY009951.1|  Homo sapiens hedgehog-interactin...    40   4.6   
gi|20152690|emb|AL671042.10|  Mouse DNA sequence from clone ...    40   4.6   
gi|3004858|gb|AF027390.1|AF027390  Homo sapiens 7q telomere,...    40   4.6   
gi|23337501|emb|AL806513.5|  Mouse DNA sequence from clone R...    40   4.6   
gi|23337712|emb|AL844221.6|  Mouse DNA sequence from clone R...    40   4.6   
gi|20069377|emb|AL731652.1|  Dog DNA sequence from clone RP8...    40   4.6   
gi|24032995|emb|AL672028.13|  Mouse DNA sequence from clone ...    40   4.6   
gi|2315158|emb|Z96798.1|BTCALDESM  Bos taurus mRNA for calde...    40   4.6   
gi|14270140|emb|AL354985.16|  Human DNA sequence from clone ...    40   4.6   
gi|4926910|gb|AC006476.3|AC006476  Homo sapiens PAC clone RP...    40   4.6   
gi|8248843|emb|AL136315.9|  Human DNA sequence from clone RP...    40   4.6   
gi|1326160|gb|U54703.1|PVU54703  Phaseolus vulgaris dehydrin...    40   4.6   
gi|544490|gb|U09956.1|BTU09956  Bos taurus caldesmon mRNA, p...    40   4.6   

Alignments


>gi|28277695|gb|BC045444.1|   Danio rerio cDNA clone MGC:55744 IMAGE:3816387, complete cds
          Length = 2263

 Score =  605 bits (305), Expect = e-170
 Identities = 453/492 (92%), Gaps = 9/492 (1%)
 Strand = Plus / Plus

                                                                        
Query: 49   atgagtgaagataagacacttatgtgctcatttcagattctgaaaccagcagagaagaag 108
            |||||||  ||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1088 atgagtgttgatgagacccttatgtgctcatttcagattctgaaaccagcagagaagaag 1147

                                                                        
Query: 109  gtgctgtcatatgagcgg-gatggaggatttgggaacagcagacatgtaactcctcctcg 167
            ||||||||||||| |||| | ||||||||||||||||||||||| |||||||||||||||
Sbjct: 1148 gtgctgtcatatg-gcggcgctggaggatttgggaacagcagacctgtaactcctcctcg 1206

                                                                        
Query: 168  gaacacagccaagggtag-aaagc-aagaaatagcatcaactactgcagcatgcctgaat 225
            |||||||||||||||| | ||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 1207 gaacacagccaagggtggcaaagccaagaaataacatcaactactgcagcatgcctgaat 1266

                                                                        
Query: 226  atcctgtccatcattctacctctccttttctttctcctcttctactccaaacaccaaact 285
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1267 atcctgttcatcattctacctctccttttctttctcctcttctactccaaacaccaaact 1326

                                                                        
Query: 286  agtgcaatgcttttttattgtt--ctctctcatcaagacaagaatgctgggaatctgaat 343
            |||||| ||||||||| || ||  ||||||||||||||||||||||||||||||||||||
Sbjct: 1327 agtgcagtgcttttttttttttttctctctcatcaagacaagaatgctgggaatctgaat 1386

                                                                        
Query: 344  ggtcatgtgcgtgaatgaaatgcttttgtggagattgtgggtttctatgtgaaacagcat 403
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1387 ggtcatgtgcgtgaatgaaatgcttttgtggagtttgtgggtttctatgtgaaacagcat 1446

                                                                        
Query: 404  tgtatgtgtatgtgttggaagtgagtttgttgtgagattgtatgcaagg-gttaagttag 462
            ||| ||||||| ||||| |||||||||||||||||||||||||||||||  ||   ||  
Sbjct: 1447 tgtgtgtgtatttgttgaaagtgagtttgttgtgagattgtatgcaaggttttttttttt 1506

                                                                        
Query: 463  tctactttagtagttacgcacctgttactgcg-ttataatttttgtttgaaagctggtca 521
            ||| |||||||| |||||||||| |||||||| |||| |||||| ||| ||||||| || 
Sbjct: 1507 tcttctttagtaattacgcaccttttactgcgtttattattttt-ttttaaagctgttct 1565

                        
Query: 522  ggatgactttct 533
            || |||||||||
Sbjct: 1566 ggttgactttct 1577



>gi|13677172|gb|AC010105.12|   Homo sapiens BAC clone RP11-563E24 from 2, complete sequence
          Length = 193320

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                        
Query: 243    acctctccttttctttctcctcttct 268
              ||||||||||||||||||||||||||
Sbjct: 143311 acctctccttttctttctcctcttct 143336



>gi|532580|gb|M27067.1|EMEBIMG   Aspergillus nidulans phosphoprotein phosphatase 1 mRNA, complete cds
          Length = 2248

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                              
Query: 71   tgtgctcatttcagattctgaaaccagcagagaa 104
            ||||||| || |||||||||||||||||||||||
Sbjct: 1751 tgtgctctttccagattctgaaaccagcagagaa 1784



>gi|24641013|ref|NM_167229.1|   Drosophila melanogaster flap wing CG2096-PA (flw) mRNA, complete cds
          Length = 2571

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                    
Query: 70   atgtgctcatttcagattctgaaaccagcagagaagaagg 109
            ||||||||||| ||||| ||||||||| | ||||||||||
Sbjct: 1837 atgtgctcattccagatcctgaaaccatccgagaagaagg 1876



>gi|24641015|ref|NM_079999.2|   Drosophila melanogaster flap wing CG2096-PB (flw) mRNA, complete cds
          Length = 2179

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                    
Query: 70   atgtgctcatttcagattctgaaaccagcagagaagaagg 109
            ||||||||||| ||||| ||||||||| | ||||||||||
Sbjct: 1444 atgtgctcattccagatcctgaaaccatccgagaagaagg 1483



>gi|31880067|gb|AC093921.2|   Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0041A22, complete sequence
          Length = 117919

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 246   tctccttttctttctcctcttcta 269
             ||||||||||||||||||||||||
Sbjct: 30073 tctccttttctttctcctcttcta 30050



>gi|20152080|gb|AY095072.1|   Drosophila melanogaster RE17877 full insert cDNA
          Length = 2126

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                    
Query: 70   atgtgctcatttcagattctgaaaccagcagagaagaagg 109
            ||||||||||| ||||| ||||||||| | ||||||||||
Sbjct: 1396 atgtgctcattccagatcctgaaaccatccgagaagaagg 1435



>gi|17432890|gb|AC025362.12|   Homo sapiens chromosome 17, clone RP11-89H15, complete sequence
          Length = 154664

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 295 cttttttattgttctctctcatca 318
           ||||||||||||||||||||||||
Sbjct: 245 cttttttattgttctctctcatca 268



>gi|34530208|dbj|AK124426.1|   Homo sapiens cDNA FLJ42435 fis, clone BLADE2006849
          Length = 2695

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 295 cttttttattgttctctctcatca 318
           ||||||||||||||||||||||||
Sbjct: 123 cttttttattgttctctctcatca 100



>gi|17861429|gb|AY069047.1|   Drosophila melanogaster GH05039 full length cDNA
          Length = 2727

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                    
Query: 70   atgtgctcatttcagattctgaaaccagcagagaagaagg 109
            ||||||||||| ||||| ||||||||| | ||||||||||
Sbjct: 1993 atgtgctcattccagatcctgaaaccatccgagaagaagg 2032



>gi|3810668|gb|AC005803.1|AC005803   Homo sapiens chromosome 17, clone hRPK.214_C_8, complete sequence
          Length = 162473

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 295    cttttttattgttctctctcatca 318
              ||||||||||||||||||||||||
Sbjct: 122405 cttttttattgttctctctcatca 122428



>gi|8367|emb|X56439.1|DMPP1B   D.melanogaster PP1-beta 9C gene for protein phosphatase 1
          Length = 1584

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 70  atgtgctcatttcagattctgaaaccagcagagaagaagg 109
           ||||||||||| ||||| ||||||||| | ||||||||||
Sbjct: 926 atgtgctcattccagatcctgaaaccatccgagaagaagg 965



>gi|33412079|emb|BX004815.6|   Zebrafish DNA sequence from clone CH211-31O18 in linkage group 9,
             complete sequence
          Length = 172899

 Score = 46.1 bits (23), Expect = 0.075
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 246   tctccttttctttctcctcttct 268
             |||||||||||||||||||||||
Sbjct: 54131 tctccttttctttctcctcttct 54153



>gi|31419587|gb|BC053296.1|   Danio rerio cDNA clone MGC:64169 IMAGE:6797400, complete cds
          Length = 1271

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                         
Query: 64  acacttatgtgctcatttcagattctgaaaccagcagagaagaagg 109
           ||||| |||||||| |||||||| ||||| ||  ||||||||||||
Sbjct: 774 acactcatgtgctcctttcagatcctgaagccgtcagagaagaagg 819



>gi|33112733|gb|AC118632.7|   Mus musculus chromosome 18, clone RP24-94D24, complete sequence
          Length = 198636

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 244    cctctccttttctttctcctct 265
              ||||||||||||||||||||||
Sbjct: 171551 cctctccttttctttctcctct 171530



>gi|18405182|ref|NM_129543.1|   Arabidopsis thaliana phosphoprotein phosphatase type 1 catalytic
           subunit (At2g39840) mRNA, complete cds
          Length = 1292

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 67  cttatgtgctcatttcagattctgaaaccagcagagaagaag 108
           ||||||||||| ||||||||| |||| || || |||||||||
Sbjct: 916 cttatgtgctcgtttcagattttgaagcccgctgagaagaag 957



>gi|6635875|emb|AL135960.1|   Human DNA sequence from clone RP1-18D14 on chromosome 1, complete
             sequence
          Length = 193358

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 251   ttttctttctcctcttctactccaaa 276
             ||||||||||||||||||| ||||||
Sbjct: 47505 ttttctttctcctcttctaatccaaa 47480



>gi|21306691|gb|AC103596.2|   Homo sapiens chromosome 1 clone RP4-669H10, complete sequence
          Length = 121021

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 244   cctctccttttctttctcctct 265
             ||||||||||||||||||||||
Sbjct: 48342 cctctccttttctttctcctct 48363



>gi|20196974|gb|AC003000.3|   Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete
             sequence
          Length = 92624

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                       
Query: 67    cttatgtgctcatttcagattctgaaaccagcagagaagaag 108
             ||||||||||| ||||||||| |||| || || |||||||||
Sbjct: 71251 cttatgtgctcgtttcagattttgaagcccgctgagaagaag 71292



>gi|6911928|emb|AJ131016.1|HSA131016   Homo sapiens SCL gene locus
          Length = 193471

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 251   ttttctttctcctcttctactccaaa 276
             ||||||||||||||||||| ||||||
Sbjct: 47505 ttttctttctcctcttctaatccaaa 47480



>gi|2642452|gb|AC002504.1|   Homo sapiens X PAC RP1-258N20 (Roswell Park Cancer Institute Human
            PAC Library) complete sequence
          Length = 134970

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 247  ctccttttctttctcctcttct 268
            ||||||||||||||||||||||
Sbjct: 5415 ctccttttctttctcctcttct 5394



>gi|26105533|dbj|AK089766.1|   Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830016K20 product:hypothetical protein,
            full insert sequence
          Length = 2882

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 402  attgtatgtgtatgtgttggaa 423
            ||||||||||||||||||||||
Sbjct: 1522 attgtatgtgtatgtgttggaa 1543



>gi|26251788|gb|BC040537.1|   Homo sapiens, clone IMAGE:5265906, mRNA
          Length = 4047

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 251  ttttctttctcctcttctactccaaa 276
            ||||||||||||||||||| ||||||
Sbjct: 3728 ttttctttctcctcttctaatccaaa 3753



>gi|11094943|gb|AC084493.1|CBRG08J21   Caenorhabditis briggsae cosmid G08J21, complete sequence
          Length = 22787

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 247 ctccttttctttctcctcttct 268
           ||||||||||||||||||||||
Sbjct: 783 ctccttttctttctcctcttct 762



>gi|166800|gb|M93411.1|ATHPPHAC   Arabidopsis thaliana phosphoprotein phosphatase-type 1 catalytic
           subunit mRNA, complete cds
          Length = 1292

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 67  cttatgtgctcatttcagattctgaaaccagcagagaagaag 108
           ||||||||||| ||||||||| |||| || || |||||||||
Sbjct: 916 cttatgtgctcgtttcagattttgaagcccgctgagaagaag 957



>gi|34495165|gb|AC127350.3|   Mus musculus BAC clone RP23-64P14 from chromosome 18, complete sequence
          Length = 190228

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 248    tccttttctttctcctcttct 268
              |||||||||||||||||||||
Sbjct: 175927 tccttttctttctcctcttct 175907



>gi|34482131|gb|AC127269.3|   Mus musculus BAC clone RP23-432B20 from chromosome 9, complete sequence
          Length = 212660

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 426    gagtttgttgtgagattgtat 446
              |||||||||||||||||||||
Sbjct: 147250 gagtttgttgtgagattgtat 147230



>gi|37620300|gb|AC134791.8|   Mus musculus chromosome 14, clone RP23-377F8, complete sequence
          Length = 210013

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 251   ttttctttctcctcttctactccaa 275
             ||||||||||||||||||| |||||
Sbjct: 75545 ttttctttctcctcttctattccaa 75521



>gi|33235760|gb|AC117668.9|   Mus musculus, clone RP23-367H12, complete sequence
          Length = 221526

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 426  gagtttgttgtgagattgtat 446
            |||||||||||||||||||||
Sbjct: 5489 gagtttgttgtgagattgtat 5469



>gi|32140818|gb|AY152836.1|   Felis catus clone BAC 160a17 major histocompatiblity complex classical
             class II region, partial sequence
          Length = 130898

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 245   ctctccttttctttctcctct 265
             |||||||||||||||||||||
Sbjct: 23990 ctctccttttctttctcctct 23970



>gi|32140815|gb|AY152835.1|   Felis catus clone PAC g7 major histocompatiblity complex classical
             class II region, partial sequence
          Length = 77680

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 245   ctctccttttctttctcctct 265
             |||||||||||||||||||||
Sbjct: 45946 ctctccttttctttctcctct 45926



>gi|23396222|gb|AC130455.2|   Homo sapiens chromosome 16 clone CTA-362G6, complete sequence
          Length = 149490

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 247    ctccttttctttctcctcttc 267
              |||||||||||||||||||||
Sbjct: 119803 ctccttttctttctcctcttc 119783



>gi|12275122|emb|AL109911.47|HS1107C24   Human DNA sequence from clone RP5-1107C24 on chromosome 20 Contains
            the 3' end of the TAF2C1 gene for TATA box binding
            protein (TBP)-associated factor (RNA polymerase II, C1,
            130kD), the 3' end of the CDH4 gene for retinal cadherin
            4 type 1 (R-cadherin), ESTs, STSs, GSSs and six CpG
            islands, complete sequence
          Length = 121982

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 292  atgcttttttattgttctctc 312
            |||||||||||||||||||||
Sbjct: 2768 atgcttttttattgttctctc 2788



>gi|15375156|gb|AC026401.7|   Homo sapiens chromosome 16 clone CTB-193M12, complete sequence
          Length = 201456

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 247    ctccttttctttctcctcttc 267
              |||||||||||||||||||||
Sbjct: 106000 ctccttttctttctcctcttc 106020



>gi|3417288|gb|U95740.1|HUU95740   Human Chromosome 16 BAC clone CIT987SK-A-362G6, complete sequence
          Length = 149480

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 247   ctccttttctttctcctcttc 267
             |||||||||||||||||||||
Sbjct: 29685 ctccttttctttctcctcttc 29705



>gi|30268424|emb|BX284114.6|   Mouse DNA sequence from clone RP23-258B4 on chromosome X, complete
             sequence
          Length = 181900

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 426   gagtttgttgtgagattgtat 446
             |||||||||||||||||||||
Sbjct: 11207 gagtttgttgtgagattgtat 11187



>gi|2895759|gb|AF045246.1|AF045246   Crithidia fasciculata universal minicircle sequence binding protein
            (UMSBP1 and UMSBP2) genes, nuclear genes encoding
            kinetoplast proteins, complete cds
          Length = 6799

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 398  cagcattgtatgtgtatgtgt 418
            |||||||||||||||||||||
Sbjct: 1611 cagcattgtatgtgtatgtgt 1591



>gi|25137140|emb|AL591544.30|   Mouse DNA sequence from clone RP23-386D6 on chromosome 11, complete
             sequence
          Length = 201673

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 244   cctctccttttctttctcctcttct 268
             ||||||||| |||||||||||||||
Sbjct: 15530 cctctccttctctttctcctcttct 15506



>gi|16944727|emb|AL162575.15|   Human DNA sequence from clone RP11-310K10 on chromosome 13, complete
              sequence
          Length = 163231

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 246    tctccttttctttctcctctt 266
              |||||||||||||||||||||
Sbjct: 147712 tctccttttctttctcctctt 147732



>gi|12666264|emb|AL358174.12|   Human DNA sequence from clone RP11-387H19 on chromosome Xq27.1-28,
             complete sequence
          Length = 96743

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 244   cctctccttttctttctcctc 264
             |||||||||||||||||||||
Sbjct: 24756 cctctccttttctttctcctc 24736



>gi|23395887|emb|AL929127.2|   Mouse DNA sequence from clone RP23-263B13 on chromosome 2, complete
             sequence
          Length = 58348

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 426   gagtttgttgtgagattgtat 446
             |||||||||||||||||||||
Sbjct: 33524 gagtttgttgtgagattgtat 33504



>gi|37060012|gb|AC131714.4|   Mus musculus BAC clone RP23-179L6 from chromosome 18, complete sequence
          Length = 193005

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 427    agtttgttgtgagattgtat 446
              ||||||||||||||||||||
Sbjct: 117844 agtttgttgtgagattgtat 117825



>gi|24643229|ref|NM_167646.1|   Drosophila melanogaster CG32827-PA [Drosophila melanogaster]
            (CG32827) mRNA, complete cds
          Length = 4000

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 63   gacacttatgtgctcatttc 82
            ||||||||||||||||||||
Sbjct: 1956 gacacttatgtgctcatttc 1937



>gi|27802067|gb|AC127365.4|   Mus musculus BAC clone RP23-8K10 from 3, complete sequence
          Length = 191217

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 249    ccttttctttctcctcttct 268
              ||||||||||||||||||||
Sbjct: 161585 ccttttctttctcctcttct 161566



>gi|22137534|gb|BC025311.1|   Homo sapiens hedgehog interacting protein, mRNA (cDNA clone
           MGC:39295 IMAGE:4122618), complete cds
          Length = 2735

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 244 cctctccttttctttctcctcttc 267
           |||||||||||||| |||||||||
Sbjct: 161 cctctccttttcttcctcctcttc 184



>gi|34914463|ref|NM_193690.1|   Oryza sativa (japonica cultivar-group) putative bZIP (leucine
           zipper) protein (B1080D07.3), mRNA
          Length = 2289

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 259 ctcctcttctactccaaaca 278
           ||||||||||||||||||||
Sbjct: 336 ctcctcttctactccaaaca 355



>gi|31342484|ref|NM_174258.2|   Bos taurus caldesmon, smooth muscle (CALD1), mRNA
          Length = 1896

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 247 ctccttttctttctcctctt 266
           ||||||||||||||||||||
Sbjct: 609 ctccttttctttctcctctt 590



>gi|20143972|ref|NM_022475.1|   Homo sapiens hedgehog interacting protein (HHIP), mRNA
          Length = 3530

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 244 cctctccttttctttctcctcttc 267
           |||||||||||||| |||||||||
Sbjct: 310 cctctccttttcttcctcctcttc 333



>gi|37182612|gb|AY358747.1|   Homo sapiens clone DNA139592 HIP (UNQ5825) mRNA, complete cds
          Length = 3399

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 244 cctctccttttctttctcctcttc 267
           |||||||||||||| |||||||||
Sbjct: 286 cctctccttttcttcctcctcttc 309



>gi|34365936|gb|AC116713.8|   Mus musculus chromosome 9, clone RP23-118M23, complete sequence
          Length = 275731

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 323   aagaatgctgggaatctgaa 342
             ||||||||||||||||||||
Sbjct: 90989 aagaatgctgggaatctgaa 91008






  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
  or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Nov 25, 2003 11:34 PM
  Number of letters in database: -24,677,614
  Number of sequences in database:  1,759,627
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 284,019
Number of Sequences: 1977211
Number of extensions: 284019
Number of successful extensions: 5357
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5353
Number of HSP's gapped (non-prelim): 4
length of query: 1232
length of database: 9,495,739,497
effective HSP length: 22
effective length of query: 593
effective length of database: 9,452,240,855
effective search space: 5605178827015
effective search space used: 5605178827015
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)